Here's some of my favorite music videos from the 1990's:  :D

Billy Idol "Cradle Of Love"
MC Hammer "U Can't Touch This"
LL Cool J "Around The Way Girl"
Nirvana "Heart Shaped Box"
Nirvana "Smells Like Teen Spirit"
Nirvana "In Bloom"
Pearl Jam "Jeremy"
Pearl Jam "Alive"
Stone Temple Pilots "Plush"
Stone Temple Pilots "Interstate Love Song"
Alice In Chains "Man In Box"
Weezer "Buddy Holly"
REM "Everybody Hurts"
Green Jelly "Three Little Pigs"
Bel Biv DeVoe "Poison"
Red Hot Chili Peppers "Under The Bridge"
Red Hot Chili Peppers "Give It Away"
Beck "Loser"
Michael Jackson "Black Or White"
Beastie Boys "Sabotage"
Jane's Addiction "Been Caught Stealing"
Guns N' Roses "November Rain"
Extreme "More Than Words"
Janet Jackson "Love Will Never Do (Without You)"
Metallica "Enter Sandman"
Dave Matthews Band "Crash Into Me"
Madonna "Vogue"
U2 "Mysterious Ways"
Lauryn Hill "Doo Wop (That Thing)"
Genesis "I Can't Dance"
Bjork "Human Behavior"
Foo Fighters "Big Me"
Foo Fighters "Everlong"
Foo Fighters "Learn To Fly"
"Weird Al" Yankovic "Smells Like Nirvana"
Alanis Morissette "Ironic"
Soul Asylum "Runaway Train"
Warrant "Cherry Pie" (Came out around 1990/1991)
(Current videos from the 2000's can be added :D)

The White Stripes "Fell In Love With A Girl"
Blink 182 "All The Small Things"
Bon Jovi "It's My Life"

Hmmm...it's so hard to remember cool music videos since they're never played anymore.  ::)  Here are some of my favorites from back in the day:

-Tom Petty and the Heartbreakers--Mary Jane's Last Dance
-Hootie and the Blowfish--Hold My Hand (I was 12 at the time and had a crush on the drummer  :))
-Michael Jackson--Black or White
-The Wallflowers--6th Avenue Heartache
-TLC--Waterfalls
-Beck--Where It's At
-Collective Soul--The World I Know
-Dixie Chicks--Goodbye Earl (could be from 2000 though)
-Rembrandts--I'll Be There For You
-Hootie and the Blowfish--Only Wanna be With You

Honorable Mention:
-You Gotta Be--Des'ree (the video was cool but the song drove me nuts)

Peter Gabriel-Steam
Weird Al Yankovic-Fat
Whitesnake-Pour Some Sugar On Me
Michael Jackson-Remember The Time

Howard

Can't forget this one, the video I consider the funniest of the 1990's…

Three Little Pigs--Green Jellÿ

I'll just list my favorite of the 90's -

Guns N' Roses - "November Rain"

Genesis--"I Can't Dance"
The Spin Doctors--"Little Miss Can't Be Wrong"
Matchbox Twenty--"Real World"
U2--"Mysterious Ways"

And, of course, "Amish Paradise" by Weird Al Yankovic 8)

Waterfalls by TLC... not the best band ever, and I don't really like that kind of music, but that song just stuck with you long after you've seen it.

Weezer- Buddy Holly
Weezer- Say It Ain't So
Beastie Boys- Sabotage
Beastie Boys- So Whatcha' Want
Fatboy Slim- Praise You
Sir Mix A Lot- Baby Got Back
Live- I Alone
Nirvana- In Bloom
Radiohead- Karma Police
Depeche Mode- It's No Good

Fave. videos from the 1990's:  8)

Faith No More "Epic"
Soundgarden "Black Hole Sun"
Foo Fighters "Big Me"
Green Jelly "Three Little Pigs"
The Smashing Pumpkins "1979"
Beastie Boys "Sabotage"
Nirvana "Heart Shaped Box"
Weezer "Buddy Holly"
Pearl Jam "Alive"
Red Hot Chili Peppers "Under The Bridge"
Guns N' Roses "November Rain"
En Vogue "Giving Him Something He Can Feel"
Aerosmith "Livin' On The Edge"
Jane's Addiction "Been Caught Stealing"
Beck "New Pollution"
Green Day "Longview"
U2 "Mysterious Ways"
Stone Temple Pilots "Plush"
TLC "Waterfalls"
Sir Mix-A-Lot "Baby Got Back"

To name a few... :D

Debbie Gibson "Anything Is Possible" (1990)

Damn, what a question.  

G&R - November Rain
Warrant - Uncle Tom's Cabin
Janet Jackson - Escapade because she was so hot
Madonna - Justify my love (see above)
Madonna - Vogue (see above again)
Smashing Pumpkins - Rocket
Radiohead - Paranoid Android
Metallica - Unforgiven
Divinyls - I touch myself (again, she was hot)

I know this doesn't count but Britney at the 99 VMAs was awesome.

Black Hole Sun-Soundgarden?(correct me if I'm wrong)
This video freaked me out, but I liked it.
I'd Do Anything for Love-Meatloaf
Tearin' Up My Heart-NSYNC (g'head n laugh)
All I Have To Give-The Backstreet boys(g'head laugh some more)
Remember the Time-Michael Jackson
Bring the Pain-Method Man
Protect Ya Neck-Wu Tang Clan
Human Nature-Madonna
Hit me Baby One More Time-Britney Spears
The Unforgiven II and The Memory Remains-Metallica
Don't speak, Spider webs and Just a Girl-No Doubt

Favorite Music Video's of the 90s:

Never Gonna Give You Up-Lisa Stansfield(Its just sexy as heck.)
Enjoy The Silence-Depeche Mode
Creep-Stone Temple Pilots
Crossroads-Bone Thugs N' Harmony
Take A Bow-Madonna(very sexy but elegantly done)
Pretty Fly For A White Guy-Offspring(very humorous)
I Get So Lonely-Janet Jackson featuring Blacksteet
Jeremy-Pearl Jam(I like this one for the 90's just for the sake of it being classic.)
Are You That Somebody?-Aaliyah(I like the choreagraphy in this video.)
Nice & Slow-Usher
Girlfriend/Boyfriend-Blacksteet featuring Janet Jackson
Remeber The Time-Michael Jackson
The Memory Remians-Metallica
Georgy Porgy-Eric Benet Featuring Faith Evans

* Metallica - The Memory Remains (Amazing!)
* REM - Everybody Hurts (Great concept, wonderful video)
* Nirvana - Come As You Are (This one has a great atmosphere)
* Queen - These Are The Days Of Our Lives (It's just one of the most touching videos ever made)
* GNR - November Rain (BTW, does anyone know how the girl ends up dead?  ??? )
* Metallica - Enter Sandman (Scary!!!)
* I Would Do Anything For Love  - Meatloaf (I just love the "Beauty & the Beast" concept. It was also one of the first videos I ever saw)
* It's All Coming Back To Me Now - Celine Dion (It makes me shiver every time I see it)
* Falling Into You - Celine Dion (I loved the circus concept)

nobody likes  TOOL.   2 great videos---PRISON SEX   &  SOBER

Britney Spears - Baby One More Time
Steps - All their videos released in the 90s
Spice Girls - All their videos, especially Wannabe and Spice Up Your Life
Backstreet Boys - Everybody
Madonna - Beautiful Stranger
S Club 7 - Bring It All Back

WHAAAAAT?  
THE BEST VIDEO WOULD HAVE TO BE "COME AS YOU ARE" BY OF COURSE THE GREATES T BAND OF THE NINETIES IF NOT OF ALL TIME, NIRVANA.

A few:

Jamiroquai - "Virtual Insanity"
Janet Jackson - "Love Will Never Do (Without You)"
Janet Jackson - "Alright"
Janet Jackson - "Any time, Any place"
Notorious B.I.G. w/Puff Daddy and Mase - "Mo Money, Mo Problems"
Bone, Thugs N' Harmony - "The Crossroads"
Michael Jackson - "Remember the Time"
Weezer - "Buddy Holly"
LL Cool J - "Doin' It"
TLC - "Waterfalls"
TLC - "No Scrubs"
Aerosmith - "Livin' on the Edge"
Guns N' Roses - "November Rain"

way too many to name my all-time #1.  Maybe Madonna's "Bedtime Stories"?  Radiohead's "Paranoid Android"?  

"Crossroads" by Bone Thugs N' Harmony, is the one that comes to mind.

charles and eddy whould i lie to you  
inxs  sucide blond
arosmith crying  (seeing his daugter in ther underwear whooo)
boysIImen end of the road love the song too
bonjovie always/this aint a love song
nivana smells like teenspirit
george michal fast love
metalaca  enter the sandman

Radiohead - Street Spirit (Fade Out)
Pearl Jam - Do The Evolution
Prodigy - Breathe
Aphex Twin - Windowlicker
Deftones - Be Quiet And Drive
TOOL - Sober, Aenima, Stinkfist (let's just say all of their videos)

"The Bad Touch" - Bloodhound Gang.

Makes me laugh every time.  :D

Aerosmith's 'Pink' is a video to watch - bizzarre but alluring.

As for current vids, I love watching Junior Senior's 'move your feet' with old style computer graphics featuring a maniacal squirrel! Funny!

Nirvana-Smells Like Teen Spirit
Nirvana-Come As You Are
Nirvana-Sliver
Nirvana-In Bloom (both versions)
Nirvana-Heart Shaped Box

(truthfully,I didn't watch MTV,VH1,BET,MuchMusic,etc. alot when I was a young one in the 90s...only for beavis and butthead and I was 5 and 6 when I seen that...and now MTV has t oruin my life for cancelling it in 1997! blahhh.........)

'Black or White' by Michael Jackson. Full of self indulgence of course but great to watch. Starts off by Macaulay Culkin blasting his guitar which sends the man off Cheers through the roof of his house!

'Red Light, Green Light' by The Wildhearts - no expense spared and a concept that stayed true to the song title ;)

Favorite music videos from the 1990's -

In order:

Queensryche - "Silent Lucidity"

Gunn N' Roses - "November Rain"

Metallica - "The Unforgiven"

Favourite's from the 90's...........

Jennifer Lopez - If you had my love
Red Hot Chili Pepper's - Love Rollercoaster
George Michael - Outside
George Michael - Freedom '90
George Michael - Too Funky
Madonna - Vogue
Madonna - Beautiful Stranger
Madonna - Drowned World / Substitute for love
Backstreet Boys - Everybody